PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC003621.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 150aa    MW: 16918.7 Da    PI: 8.4642
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC003621.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.91e-1450133293
                   EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                   +k ++ps+v+   +l l+ +f+++  ++k+ +  +tl de+g+++   +  rk++    l++GWk+F  a++L +gD vvF+l++   ++++
  EcC003621.10  50 VKSMLPSHVSGGFWLGLSVQFCKSS-LPKNDG-VITLVDEDGEEFPTIYLARKTG----LSGGWKGFSVAHELTDGDAVVFQLIKP--TTMK 133
                   6899******************766.555444.8***************656665....***********************9973..3333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.9E-1841138IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-2142138IPR015300DNA-binding pseudobarrel domain
CDDcd100178.18E-2247134No hitNo description
SMARTSM010198.8E-1849141IPR003340B3 DNA binding domain
PROSITE profilePS5086310.5649140IPR003340B3 DNA binding domain
PfamPF023626.4E-1350134IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
ITKLFMKIDR IFKRRDPLNL VYASAEAREY ALEKAEQLQS TLEPQYPTLV KSMLPSHVSG  60
GFWLGLSVQF CKSSLPKNDG VITLVDEDGE EFPTIYLARK TGLSGGWKGF SVAHELTDGD  120
AVVFQLIKPT TMKVVMMRLH MRLEIHFLAS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061766.11e-90PREDICTED: B3 domain-containing protein At3g19184 isoform X2
SwissprotQ9FMZ44e-53Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A059BSX92e-90A0A059BSX9_EUCGR; Uncharacterized protein
STRINGGLYMA04G04030.12e-59(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-54B3 family protein